| Organism | Category/subcategory | Model | Manuscript details | Download model | Run |
| Arabidopsis thaliana | metabolism/methionin threonin | curienA kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana | more... | download | run(old) | run(new) |
| Entamoeba histolytica | metabolism/glycolysis | saavedraGlycolysis Entamoeba histolytica | more... | download | run(old) | run(new) |
| Escherichia coli | metabolism/tryptophan | bhartiyaDynamic model of Escherichia coli tryptophan operon | more... | download | run(old) | run(new) |
| Escherichia coli | metabolism/threonine | chassagnole2Threonine synthesis pathway in E. coli | more... | download | run(old) | run(new) |
| Escherichia coli | metabolism/central carbon metabolism | chassagnole1Dynamic modelling of the central carbon metabolism | more... | download | run(old) | run(new) |
| Escherichia coli | metabolism/ammonium assimilation | bruggemanThe multifarious short-term regulation of ammonium assimilation of E. coli | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | mulquineyRed Blood Cell Model | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | lambethA Computational Model for Glycogenolysis in Skeletal Muscle | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | heinrichHeinrich | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | baliA modelling study of feedforward activation in
human erythrocyte glycolysis | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | jamshidiMetabolic Dynamics in the Human Red Cell.
Part I A Comprehensive Kinetic Model | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | ataullakhanovThe Regulation of Glycolysis in Human Erythrocytes
The Dependence of the Glycolytic Flux on the ATP Concentration | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | westermarkPhosphofructokinase and glycolytic oscillations in the Pancreatic B-cell | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/None | olahNone | more... | download | run(old) | run(new) |
| Homo sapiens | metabolism/glycolysis | holzhutterKinetic model of human erythrocytes | more... | download | run(old) | run(new) |
| Lactococcus lactis | metabolism/pyruvate branches | hoefnagel1Pyruvate branches in Lactococcus Lactis | more... | download | run(old) | run(new) |
| Lactococcus lactis | metabolism/glycolysis | hoefnagel2Detailed glycolytic model in Lactococcus lactis | more... | download | run(old) | run(new) |
| Nicotiana tabacum | metabolism/photosynthesis | poolmanModelling Photosynthesis and its control | more... | download | run(old) | run(new) |
| Rattus norvegicus | metabolism/urea cycle | maherMathematical modelling of the urea cycle | more... | download | run(old) | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | teusink2Turbo design in glycolysis | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | gustavsson1glycolytic oscillations in individual isolated yeast cells, category 1 | more... | download | run(old) | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez7yeast glycolytic oscillations, model 7: cell free extracts in CSTR | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez6yeast glycolytic oscillations, model 6: cell free extracts | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez5yeast glycolytic oscillations, model 5: CSTR | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez4yeast glycolytic oscillations, model 4: Synchronization | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez3yeast glycolytic oscillations, model 3: Large amplitude | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez2yeast glycolytic oscillations, model 2: Hopf bifurcation | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | dupreez1yeast glycolytic oscillations, model 1: steady state | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | gustavsson4glycolytic oscillations in individual isolated yeast cells, category 4 | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | snoep2Control of growth in yeast | more... | download | run(old) | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | snoep1Control of growth in yeast | more... | | run(old) | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | gustavsson3glycolytic oscillations in individual isolated yeast cells, category 3 | more... | download | | run(new) |
| Saccharomyces cerevisaie | metabolism/glycolysis | gustavsson2glycolytic oscillations in individual isolated yeast cells, category 2 | more... | download | | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis | hynneFull scale model of glycolysis in Saccharomyces cerevisiae | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis | teusinkGlycolysis in Saccharomyces cerevisiae | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis | dano1Membrane current and its application to conduction and excitation in nerve | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis | galazzo1Glycolysis in Saccharomyces cerevisiae, 6 variables | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis | nielsenSustained oscillations in glycolysis | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycolysis
| dano3Modelling Carbohydrate Metabolism in Potato Tuber Cells | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae | metabolism/glycerol | cronwrightMCA of Glycerol Synthesis in Saccharomyces cerevisiae | more... | download | run(old) | run(new) |
| Saccharomyces cerevisiae
| metabolism/glycolysis | dano2Triosephosphate isomerase deficiency: from mRNA to metabolism | more... | download | run(old) | run(new) |
| Sulfolobus solfataricus | metabolism/glycolysis | kouril1GAP metabolism in Sulfolobus | more... | | | run(new) |
| Trypanosoma brucei | metabolism/glycolysis | bakkerGlycolysis in Trypanosoma brucei | more... | download | run(old) | run(new) |
| human | metabolism/glutathion | whillier1glutathione synthesis in human erythrocytes | more... | | | run(new) |
| human | metabolism/glutathion | whillier2glutathione synthesis in human erythrocytes | more... | | | run(new) |
| human | metabolism/glutathion | whillier3glutathione synthesis in human erythrocytes | more... | | | run(new) |
| human | metabolism/glutathion | reedA mathematical model of glutathione metabolism | more... | download | run(old) | run(new) |
| human | metabolism/glutathione | geenenmodeling biomarkers for glutathione metabolism | more... | download | run(old) | run(new) |
| not specified | metabolism/deoxynucleotide | bradshawA Computational Model of Mitochondrial Deoxynucleotide Metabolism | more... | download | run(old) | run(new) |
| potato | metabolism/None | assmusReduction of a biochemical model with preservation of its basic dynamic properties 2 | more... | download | run(old) | run(new) |
| sugar cane | metabolism/sucrose accumulation | uysReduction of a biochemical model with preservation of its basic dynamic properties 1 | more... | download | run(old) | run(new) |
| sugar cane | metabolism/glycolysis | rohwer1Sucrose accumulation in sugarcane | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes linear path lin kinetics | lin3linkin3 enzyme Linear pathway with linear kinetics | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes branched path | branch33 enzyme Branched pathway | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes linear path | lin33 enzyme Linear pathway | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes linear path moiety | lin3moi3 enzyme Linear pathway including a moiety | more... | download | run(old) | run(new) |
| unknown | metabolism/6 enzymes | kintutcKinetics tutorial C (6 enzymes) | more... | download | run(old) | run(new) |
| unknown | metabolism/glycolysis | wolfGlycolysis, oscillating system (9 variables) | more... | download | run(old) | run(new) |
| unknown | metabolism/glycolysis | bierGlycolysis: oscillating system, 2 variables | more... | download | run(old) | run(new) |
| unknown | metabolism/4 enzymes b | kintutdKinetics tutorial D (4 enzymes) | more... | download | run(old) | run(new) |
| unknown | metabolism/glycolysis | goldbeterGlycolysis: oscillating system, 2 variables | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes b | kintutbKinetics tutorial B (3 enzymes) | more... | download | run(old) | run(new) |
| unknown | metabolism/3 enzymes a | kintutaKinetics tutorial A (3 enzymes) | more... | download | run(old) | run(new) |
| unknown | metabolism/5 enzymes branched path moiety feedback | feedbackmoi5 Enzyme Branched pathway with moiety and feedback | more... | download | run(old) | run(new) |
| unknown | metabolism/5 enzymes branched path | branch55 Enzyme Branched pathway | more... | download | run(old) | run(new) |
